Thread: for / foreach loop in tcsh?

hello all,

have loop accesing files in folder, convert them format (.mgz) , save them folder.

here algorithmic steps:

read list of files in folder.
convert file extensions (.mgz)
save files different folder.


here code used in bash script:

code:

#!/bin/bash  cd /usr/local/freesurfer/subjects/$1/data_temp  temp=1;  in $(ls); mri_convert $i 00$temp.mgz let temp=temp+1; done

have write in tcsh after hours of googling have found insufficient documentation foreach command:

code:

#!/bin/bash  cd /usr/local/freesurfer/subjects/$1/data_temp  set count=1  foreach ( ` /usr/local/freesurfer/subjects/$1/data_temp * ` )  foreach? echo $i  foreach? mri_convert $i /usr/local/freesurfer/subjects/$1/mri/orig/00$count.mgz  foreach? let count=count+1  foreach? done

final errors taking are:

/usr/local/freesurfer/subjects/rhsr/data_temp: permission denied.
foreach: end not found.

help??

posted aytacd

hello all,

have loop accesing files in folder, convert them format (.mgz) , save them folder.

here algorithmic steps:

read list of files in folder.
convert file extensions (.mgz)
save files different folder.


here code used in bash script:

code:

#!/bin/bash    cd /usr/local/freesurfer/subjects/$1/data_temp    temp=1;    in $(ls);  mri_convert $i 00$temp.mgz  let temp=temp+1;  done

have write in tcsh after hours of googling have found insufficient documentation foreach command:

code:

#!/bin/bash    cd /usr/local/freesurfer/subjects/$1/data_temp    set count=1    foreach ( ` /usr/local/freesurfer/subjects/$1/data_temp * ` )    foreach? echo $i    foreach? mri_convert $i /usr/local/freesurfer/subjects/$1/mri/orig/00$count.mgz    foreach? let count=count+1    foreach? done

final errors taking are:

/usr/local/freesurfer/subjects/rhsr/data_temp: permission denied.
foreach: end not found.

help??

after seconds of googling, found man page tcsh, , section 'foreach' leads me believe tcsh means when says "foreach: end not found".

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